attribute_system_with_applyto_data.php

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<?php
$model = \Magento\TestFramework\Helper\Bootstrap::getObjectManager()->create(
    \Magento\Catalog\Model\ResourceModel\Eav\Attribute::class
);
$model->setName('system_attribute')->setId(3)->setEntityTypeId(4)->setIsUserDefined(0)->setApplyTo(['simple']);
$model->save();