categories_no_products_rollback.php

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<?php
$objectManager = \Magento\TestFramework\Helper\Bootstrap::getObjectManager();
$registry = $objectManager->get(\Magento\Framework\Registry::class);

$registry->unregister('isSecureArea');
$registry->register('isSecureArea', true);

//Remove categories
$collection = $objectManager->create(\Magento\Catalog\Model\ResourceModel\Category\Collection::class);
$collection
    ->addAttributeToFilter('level', 2)
    ->load()
    ->delete();

$registry->unregister('isSecureArea');
$registry->register('isSecureArea', false);