indexer_rollback.php

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<?php
$objectManager = \Magento\TestFramework\Helper\Bootstrap::getObjectManager();

$registry = $objectManager->get(\Magento\Framework\Registry::class);
$registry->unregister('isSecureArea');
$registry->register('isSecureArea', true);

$collection = $objectManager->create(\Magento\Catalog\Model\ResourceModel\Product\Collection::class);
$collection->addAttributeToSelect('id')->load();
if ($collection->count() > 0) {
    $collection->delete();
}

$store = $objectManager->create(\Magento\Store\Model\Store::class);
$storeCode = 'secondary';
$store->load($storeCode);
if ($store->getId()) {
    $store->delete();
}

$registry->unregister('isSecureArea');
$registry->register('isSecureArea', false);